PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA168G00028
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 252aa    MW: 26177.3 Da    PI: 10.0146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA168G00028genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.8e-073861225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++G++C+F H
  AA168G00028 38 KSKPCTKFFSTSGCPFGENCHFLH 61
                 7789******************** PP

2zf-CCCH37.73.4e-12218243127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ykt+lC +f++ G C +GdrC+FaHg+
  AA168G00028 218 YKTKLCERFSK-GNCTFGDRCHFAHGE 243
                  9**********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.213663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-83861IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-53861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-15103184IPR004088K Homology domain, type 1
SMARTSM003222.7E-11113183IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.108.6E-16113182IPR004088K Homology domain, type 1
PROSITE profilePS5008414.445114178IPR004088K Homology domain, type 1
CDDcd001053.48E-13116178No hitNo description
PfamPF000136.6E-12117180IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-16212247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-9217247IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-8217243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.234217244IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9218243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDARKRGRPE AGSFNSNGGG FKRSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL  60
HYVPGGYNAV SQMTNIGPPM PQVTRNIQGS GGGGRFSGRG EGPGPGHVLN FGASATSKIS  120
VDASLAGAII GKGGVSSKQI CRQTGAKLSI QDHERDPNLK NIELEGTFEQ INEASAMVRE  180
LIVRLNSAAA KKPAPGGGGG GGGGGLNADG KPHPGSNYKT KLCERFSKGN CTFGDRCHFA  240
HGEAELRRSG VA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407365.11e-153hypothetical protein EUTSA_v10021405mg
SwissprotQ9C7C31e-149C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD41e-153E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-153V4M8U6_EUTSA; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30010101e-151(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-138C3H family protein